Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs74331252 chr4:187810611 G/T 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs74336734 chr16:84230846 T/G 2.56E-7 478 31.12 31.58 22.93 KM Plot
PRAD rs74350546 chr1:1157960 T/C 2.57E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs74372559 chr11:129945123 C/T 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs74374908 chr1:1157625 C/T 3.58E-9 489 31.27 30.73 13.73 KM Plot
PRAD rs74409395 chr6:7196324 C/T 8.63E-5 488 32.42 27.82 26.95 KM Plot
PRAD rs74420422 chr2:107443148 T/C 0.000115 493 30.8 31.13 32.63 KM Plot
PRAD rs74483380 chr4:187810719 C/T 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs74503622 chr6:111527616 T/C 1.01E-5 489 31.27 31.15 19.82 KM Plot
PRAD rs74516317 chr11:69233516 C/G 2.02E-5 490 30.97 31.13 25.5 KM Plot
PRAD rs74517426 chr8:54171820 T/A 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs74521136 chr9:72868313 T/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs7453272 chr6:127633959 C/T 4.23E-5 494 31.13 32.47 20.95 KM Plot
PRAD rs7455447 chr7:135062056 C/T 2.24E-9 489 30.8 31.33 3.03 KM Plot
PRAD rs74562835 chr5:154179357 T/C 1.12E-8 489 30.27 32.63 20.47 KM Plot